1. 24 may 2011: Caenorhabditis Clegans and Drosophila Melanogaster are added into FunNet and version 1.00-12 of the package is released.
  2. 13 november 2010: Danio Rerio is added into FunNet and version 1.00-11 of the package is released. Some annotation bugs concerning Arabidopsis are also fixed.
  3. 19 october 2010: The paper "Interactional and functional centrality in transcriptional co-expression networks" is published in Bioinformatics.
  4. 25 august 2010: Arabidopsis Thaliana is added into FunNet.
  5. December 2009: First version of FunNetViz is created and implemented for Cytoscape.
  6. 24 novembre 2009: Annotation Transcriptional Centrality (ATC) algorithm is implemented in FunNet' core.
  7. September 2008: The FunNet website is launched.